ITS2 and psbA–trnH are used as standard and supplementary DNA barcodes for identifying herbal materials, respectively. The universal primers and the reaction conditions for the ITS2 barcode and the psbA–trnH barcode used for PCR amplification can be found in Table 1. PCR amplification was performed in 25 μL reaction mixtures containing approximately 30 ng of genomic DNA template, 1 X PCR buffer without MgCl2, 2.0 mM MgCl2,0.2 mM of each dNTP, 0.1 mM of each primer and 1.0 U Taq DNA Polymerase. The universal primers and the reaction conditions for the backup ITS barcode also can be found in Table 1. Purified PCR products need to be sequenced in both directions using PCR primers.
Table 1 The universal primers and the reaction conditions
Marker |
Name of primers |
Primer sequence(5′-3′) |
PCR reaction condition |
ITS2 |
2F |
ATGCGATACTTGGTGTGAAT |
94℃ 5 min |
|
3R |
GACGCTTCTCCAGACTACAAT |
94℃ 30 sec, 56℃ 30 sec, 72℃ 45 sec, 40 cycles |
|
|
|
72℃ 10 min |
ITS |
5F |
GGAAGTAAAAGTCGTAACAAGG |
94℃ 5 min |
|
4R |
TCCTCCGCTTATTGATATGC |
94℃ 1 min, 50℃ 1 min, 72℃ 1.5 min + 3 sec/cycle, 30 cycles |
|
|
|
72℃ 7 min |
psbA-trnH |
psbAF |
GTTATGCATGAACGTAATGCTC |
95℃4 min |
|
trnHR |
CGCGCATGGTGGATTCACAATCC |
94℃ 30 sec, 55℃ 1 min, 72℃ 1 min, 35 cycles |
|
|
|
72℃ 10 min |
psbA-trnH |
psbA |
CGAAGCTCCATCTACAAATGG |
95℃4 min |
|
trnH |
ACTGCCTTGATCCACTTGGC |
94℃ 30 sec, 55℃ 1 min, 72℃ 1 min, 35 cycles |
|
|
|
72℃ 10 min |
References:
Chen SL, Yao H, Han JP, et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.PLoS ONE, 2010, 5: e8613.
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Kress WJ, Erickson DL. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbAspacer region. PLoS ONE, 2007, 2: e508
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